Publications

2022

Delandre C, McMullen JPD, Paulsen J, Collas P, Marshall OJ. Eight principal chromatin states functionally segregate the fly genome into developmental and housekeeping roles. bioRxiv 2022.10.30.514435; doi: https://doi.org/10.1101/2022.10.30.514435. [link]

Veen K, Froldi F, Dong Q, Alvarez-Ochoa E, Nguyen P-K, Harvey KF, McMullen JPD, Marshall OJ, Jusuf PR, Cheng LY. Cell cycle and temporal transcription factors regulate proliferation and neuronal diversity of dedifferentiation-derived neural stem cells. bioRxiv 2022.07.24.501087; doi: https://doi.org/10.1101/2022.07.24.501087 [link]

Heng JIT, Viti L, Pugh K, Marshall OJ, Agostino M. (2022) Understanding the impact of ZBTB18 missense variation on transcription factor function in neurodevelopment and disease. Journal of Neurochemistry 161 (3), 219-235.

Marshall OJ & Delandre C. (2022) Profiling Protein–DNA Interactions Cell-Type-Specifically with Targeted DamID. In: Horsfield, J., Marsman, J. (eds) Chromatin. Methods in Molecular Biology, vol 2458. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2140-0_11 [link]

2021

Díaz-Torres A, Rosales-Nieves AE, Pearson JR, Santa-Cruz Mateos C, Marín-Menguiano M, Marshall OJ, Brand AH and González-Reyes A. (2021) Stem cell niche organisation in the Drosophila ovary requires the ECM component Perlecan. Curr Biol, 31 (8), 1744-1753. e5. [link]

Hatch HAM, Belalcazar HM, Marshall OJ & Secombe J. (2021) A KDM5–Prospero transcriptional axis functions during early neurodevelopment to regulate mushroom body formation eLife. 10: e63886  [link]

Aughey GN, Delandre C, McMullen JPD, Southall TD & Marshall OJ. (2021) FlyORF-TaDa allows rapid generation of new lines for in vivo cell-type specific profiling of protein-DNA interactions in Drosophila melanogaster. G3. 11 (1): jkaa005 [link]

2020

Zaytseva O, Mitchell NC, Delandre C, Nie Z, Evers M, Werner JK, Lis JT, Hannan RD, Levens DL, Marshall OJ & Quinn LM, 2020. Psi promotes Drosophila wing growth through transcriptional repression of key developmental networks. bioRxiv. https://doi.org/10.1101/2020.05.13.094664 [link]

Delandre C, McMullen JPD & Marshall OJ. (2020) Membrane-bound GFP-labelled vectors for Targeted DamID allow simultaneous profiling of expression domains and DNA binding. bioRxiv. https://doi.org/10.1101/2020.04.17.045948 [link]

Jefferies G, Somers J, Lohrey I, Chaturvedi V, Calabria J, Marshall OJ, Southall TD, Saint R & Murray MJ. (2020) Maintenance of cell fate by the Polycomb group gene sex combs extra enables a partial epithelial mesenchymal transition in Drosophila. G3. 10: 4459-4471. [link]

Zaytseva O, Mitchell NC, Guo L, Marshall OJ, Parsons LM, Hannan RD, Levens, David L, Quinn LM. (2020) Transcriptional repression of Myc underlies AGO1’s tumour suppressor function. Development. 147, dev190231. [link]

2019 and earlier

Gervais L, Van Den Beek M, Josserand M, Sallé J, Stefanutti M, Perdigoto CN, Skorski P, Mazouni K, Marshall OJ, Brand AH, Schweisguth F and Bardin AJ. (2019) Stem cell proliferation is kept in check by the chromatin regulators Kismet/CHD7 and Trr/MLL3/4. Dev Cell. 49: 556–573. [link]

Delandre C and Marshall OJ.  (2019) United colours of chromatin? Developmental genome organisation in flies. Biochem Soc Trans. DOI: 10.1042/BST20180605. [link]

Doupé DP, Marshall OJ, Dayton H, Brand AH and Perrimon N. (2018) Drosophila intestinal stem and progenitor cells are major sources and regulators of homeostatic niche signals. PNAS. 115(48): 12218-12223. [link]

Marshall OJ and Brand AH. (2017) Chromatin state changes during neural development revealed by in vivo cell-type specific profiling.  Nature Communications8: 2271. [link]

Marshall OJ*, Southall TD*, Cheetham SW, Brand AH. (2016) Cell-type specific profiling of protein-DNA interactions with TaDa. Nature Protocols. 11:1586–98 [link]

Marshall OJ and Brand AH. (2015) damidseq_pipeline: an automated pipeline for processing DamID sequencing datasets. Bioinformatics. 31:3371-3 [link]

Garsed DW*, Marshall OJ*, Corbin VD*, Hsu A*, Di Stefano L, Schröder J, Li J, Feng ZP, Kim BW, Kowarsky M, Lansdell B, Brookwell R, Myklebost O, Meza-Zepeda L, Holloway AJ, Pedeutour F, Choo KH, Damore MA, Deans AJ, Papenfuss AT, Thomas DM. (2014) The architecture and evolution of cancer neochromosomes. Cancer Cell. 26:653-67 [link]

Southall TD, Gold KS, Egger B, Davidson CM, Caygill EE, Marshall OJ, Brand AH. (2013) Cell-type-specific profiling of gene expression and chromatin binding without cell isolation: assaying RNA Pol II occupancy in neural stem cells. Dev Cell. 26:101-12

All of Owen’s publications (Google Scholar)

(* denotes equal contribution)